Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------------MHKILILLLIILPIKLLAVEIEIIADVNGEPISNLDI----EKRINLTHSLFGTQSIDKNELKLQILKQLID------EIIIINEAQRLNIKLSDEELSNAVVLFLTQSFKL-KDNEVDQYAKEHNIGLNILKRQIECQLLWDKIIEVRIVPFINISDKEVNNAKGQIEKPDYLITFQEFIIPNQKDADVYGIAEDLVEKLRNNNNDFIPEAPIKMRKVTVNLNQLKGNLKSILEGLKTGDIAGPVSSSEDYSIVKVIDKVQLDHAMLESTLKLKQIVVKDSESLLDNLKEQKVNCLNFDELADNFNLPNAKEFEIKMRDLNPD-----------LQALFSKTSVNEIIESRENSTARLMMLCDIKNNVVDAEATKQQIYQQKIMTQ-SNLLLDNLRKNAAVSYQYS---- |
| 1QHD Chain:A ((4-398)) | MDVLYSLSKTLKDARDKIVEGTLYSNVSDLIQQFNQMIITMNGNEFQTGGIGNLPIRNWNFDFGLLGTTLLNLDANYVETARNTIDYFVDFVDNVCMDEMVRESQRNGIAPQSDSLIKLSGIKFKRINFDNSSEYIENWNLQNR--RQRTGFTFHKPNIFPYSASFTLNRSQPAHDNLMG------------TMWLNAGSEIQVAGFDYSCAINAPANTQQFEHIVQLRRVLTTATITLLPDAERFSFP---------RVITSADGATTWYFNPVILRPNNVEIEFLLNGQIINTYQA-----RFGTIIARNFDTIRLSFQLMRPPNMTPAVAALFPNAQPFEHHATVGLTLRIESAVCESVLADASETMLANVTSVRQEYAIPVGPVFPPGMNWTDLITNYSPSREDNLQRVFTVASIRSMLVK |
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General information:
TITO was launched using:
| RESULT:
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Template: 1QHD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 79415 for 2571 contacts (30.9/contact) +
2D Compatibility (PS) -36549 + (NN) 4845 + (LL) 1852
1D Compatibility (HY) 17600 + (ID) 1050
Total energy: 66113.0 ( 25.71 by residue)
QMean score : -0.042
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