Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQKGKELSSDV-------------YEANIVLNDKTMATLPKIGYHMLNDQ--------LVMHNHVTEEKVVISRDFHFLKAVKFSDDYKLTFYNALGNEFFEYKKYDLQYSNISD---------KNKFIGLNCAKKIQFESRRVI-----------
1IJA Chain:A ((1-148))
MQAKPQIPKDKSKVAGYIEIPDADIKEPVYPGPATPEQLNRGVSFAEENESLDDQNISIAGHTFIDRPNYQ----FTNLKAAKKGSMVYFKV----GNETRKYKMTSIRDVKPTDVGVLDEQKGKDKQLTLITCDDYNEKTGVWEKRKIFVATEVK
General information:
TITO was launched using:
RESULT:
Template:
1IJA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38311 for 606 contacts (-63.2/contact) +
2D Compatibility (PS) -10568 + (NN) 5931 + (LL) 532
1D Compatibility (HY) 800 + (ID) 1000
Total energy: -42616.0 ( -70.32 by residue)
QMean score : 0.276
(partial model without unconserved sides chains):
PDB file :
Tito_1IJA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IJA-query.scw
PDB file :
Tito_Scwrl_1IJA.pdb
: