Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MILRNLLFLLPPEIAHSLAIMMLKRISYRKPIELPESLSVNCFNNK---FRSPVGLAAGFDKNAEVIRSMLSFGFGFIEAGTVTKHPQYGNAKPRIFRLIEDQGVINRLGFNNKGID-------YFLKQISETKL-DDCILGINIGKNSASKDQVSDYIDLIKMVYGKSSYIVLNISSPNTPNLRNLHNRQELSELLKSITLTRKSIDNSESVPIM-----------------LKISPDIDQQTKEDIAGLALEYKIDGLTISNTTVSRDNLHSHHNESGGLSGRPLFKLSTELLSDIYKLTQGKILLIGCGGISSGADAYKKIKAGASLVQLYTALIYHGPRAVNKINLELAELVRKDGLSNIGEAVGCDCRF |
3O8A Chain:A ((46-409)) | IFLKFCLKYIDGEICHDLFLLLGKYNIL--PYDTSNDSIYACTNIKHLDFINPFGVAAGFDKNGVCIDSILKLGFSFIEIGTITPRGQTGNAKPRIFRDVESRSIINSCGFNNMGCDKVTENLILFRKRQEEDKLLSKHIVGVSIGKNKDTVNIVDDLKYCINKIGRYADYIAINVSSPNTPGLRD---NQEAGKLKNIILSVKEEIDNLEKNNIMNDEFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYSCLVFNGMKSAVQIKRELNHLLYQRGYYNLKEAIGRK--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3O8A.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -126851 for 2890 contacts (-43.9/contact) +
2D Compatibility (PS) -36846 + (NN) -27689 + (LL) 340
1D Compatibility (HY) -28400 + (ID) 7150
Total energy: -226596.0 ( -78.41 by residue)
QMean score : 0.554
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