Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEFAVEQAKLAKKNDEIPIGAVIVSGDN-IISFAHNI---SNDPTAHAEMLVIRQACELLSTSVLCNADMYVTLEPCPMCAQAISFARIKRLYFGAYNSKGGGIENGAKIFQ--FCSHVPEVYGGVLETECSFLLKDFFEKLRDSTNYY
2B3J Chain:A ((11-154))
MTLAIEEAKKAAQLGEVPIGAIITK-DDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYVTLEPCVMCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQSNFNHRAIVDKGVLKEACSTLLTTFFKNLRAN----
General information:
TITO was launched using:
RESULT:
Template:
2B3J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117265 for 1174 contacts (-99.9/contact) +
2D Compatibility (PS) -15312 + (NN) -9779 + (LL) -16
1D Compatibility (HY) -10400 + (ID) 3000
Total energy: -155772.0 ( -132.68 by residue)
QMean score : 0.418
(partial model without unconserved sides chains):
PDB file :
Tito_2B3J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2B3J-query.scw
PDB file :
Tito_Scwrl_2B3J.pdb
: