Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKNIKNILSITELLSGWL-LHDFANSMNGIMFGLEELEAGNQNDASTHREALLLLKESSDDLIYKHKV---MKQAYSSSADNRSFSQTKLNIE-NYLLKKK
1CQ8 Chain:A ((205-283))
----------------GWLPLFDFA--YQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPA
General information:
TITO was launched using:
RESULT:
Template:
1CQ8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 9407 for 373 contacts (25.2/contact) +
2D Compatibility (PS) -7489 + (NN) 2705 + (LL) 1280
1D Compatibility (HY) -2400 + (ID) 1450
Total energy: 2053.0 ( 5.50 by residue)
QMean score : -0.017
(partial model without unconserved sides chains):
PDB file :
Tito_1CQ8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CQ8-query.scw
PDB file :
Tito_Scwrl_1CQ8.pdb
: