Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSRIPFLLILIIVIASLPVINNWLSYHNQTLNDDYIGERLDNYISRNFDKIIKILREESIKSNYAARDNATKGKILQYENKIFDLAYPYLGNENSNIIAVGFFDYSCGYCKAIKDDIKQLI-NDGKIKYIFRDTPILG-----------------------------------------------NNSLKAAKSALAVYFIDKGKYFDFHYAILDHK----GEF-SDENILDIVKSIGINEDNFNNSMK-NNAGKIEQMINDSKFLVRELGAGGTPFLIIG--DS--LFIGATDLDVLRKKVDELSHKQN |
1R4W Chain:A ((3-216)) | ---------------------------------------------------------------------------------------------PAPRVLELFYDVLSPYSWLGFEVLCRYQHLW-NIKLKLRPALLAGIMKDSGNQPPAMVPHKGQYILKEIPLLKQLFQVPMSVPKDFFGEHVKKGTVNAMRFLTAVSMEQPEMLEKVSRELWMRIWSRDEDITESQNILSAAEKAGMATAQAQHLLNKISTELVKSKLRETTGAACKYGAFGLPTTVAHVDGKTYMLFGSDRMELLAYLLGEKWMGPV |
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General information:
TITO was launched using:
| RESULT:
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Template: 1R4W.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -82201 for 1249 contacts (-65.8/contact) +
2D Compatibility (PS) -17053 + (NN) -9041 + (LL) 6560
1D Compatibility (HY) -3600 + (ID) 1050
Total energy: -106385.0 ( -85.18 by residue)
QMean score : 0.520
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