Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKFVRLLSSILVALSVIFLGYCYFTKKGIFAPAVIHNAEVKIGGDFSLINQ--DGQVIRSNDFKDKYMMIFFGFSSCKKICPM-NLGIISETLAKLDEKTSDKLQTFFITVDPEC---DSTEKLKEFQQQFDYRIQMLTGERKKI--DEVIANYKVYTSKVGGEEGINHSSIIYLIGPGGKYVTHFAADLNSDESQSDKIAAEIKKYINEL
3EYT Chain:A ((2-153))
---------------------------------------NAMKAPELQIQQWFNSATDLTLADLRGKVIVIEAFQMLCPG-CVMHGIPLAQKVRAAFP---EDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAMPRTMAAYQMRG-----------TPSLLLIDKAGDLRAHHFGDV-----SELLLGAEIATLLGEA
General information:
TITO was launched using:
RESULT:
Template:
3EYT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88052 for 1082 contacts (-81.4/contact) +
2D Compatibility (PS) -15668 + (NN) -10076 + (LL) 4364
1D Compatibility (HY) -6800 + (ID) 1200
Total energy: -117432.0 ( -108.53 by residue)
QMean score : 0.537
(partial model without unconserved sides chains):
PDB file :
Tito_3EYT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3EYT-query.scw
PDB file :
Tito_Scwrl_3EYT.pdb
: