Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSKEHDFHLVDSSPWPIAMSAAIFILVLGLVGTLHKQ------VSGIFGLVLGTSAVSGVLFYWWKDVVKEAIYDKCHTAIVKHGLKFAMYLFILSEVVFFIVFFCSFFKAWLDPVFLFETFSPTKKVKWPPEGILLPDPWSLPFMNTLILLLSGTTITWAHHSLF-KDDKKSMIKMLYITILLGVFFVIVQAIEYHETS-FSLQEAGIYASNFYMITGFHCAHVIIGIIFLSVCLFRARKDQFTPQDHLCFEFASWYWHFVDIVWIFLFVFVYWLSVF
1QLE Chain:C ((1-273))
AHVKNHDYQILPPSIWPFFGAIGAFVMLTGAVAWMKGITFFGLPVEGPWMFLIGLVGVLYVMFGWWADVVNEGE-TGEHTPVVRIGLQYGFILFIMSEVMFFVAWFWAFIKNALYPM---GPDSPIKDGVWPPEGIVTFDPWHLPLINTLILLLSGVAVTWAHHAFVLEGDRKTTINGLIVAVILGVCFTGLQAYEYSHA-AFGL-ADTVYAGAFYMATGFHGAHVIIGTIFLFVCLIRLLKGQMTQKQHVGFEAAAWYWHFVDVVWLFLFVVIYIWGR-
General information:
TITO was launched using:
RESULT:
Template:
1QLE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -239841 for 1864 contacts (-128.7/contact) +
2D Compatibility (PS) -27044 + (NN) -13716 + (LL) 756
1D Compatibility (HY) -36000 + (ID) 6200
Total energy: -322045.0 ( -172.77 by residue)
QMean score : 0.275
(partial model without unconserved sides chains):
PDB file :
Tito_1QLE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QLE-query.scw
PDB file :
Tito_Scwrl_1QLE.pdb
: