Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAIERTLSILKPDTVKNNIIGNINSYIEKSGLRIIAQKMMLLTKKQAELFYAIHKDRPFFGGLVEFMTSGPVIVQVLVGENAISKYRQIMGATDPKQADKGTIRGDFADDVNENRVHGSDSLENAHKEIAFFFAECELV
1NDC Chain:A ((9-144))
---ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIHGSDSVESANREIALWFKPEELL
General information:
TITO was launched using:
RESULT:
Template:
1NDC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61477 for 1047 contacts (-58.7/contact) +
2D Compatibility (PS) -14453 + (NN) -2919 + (LL) 556
1D Compatibility (HY) -10400 + (ID) 3150
Total energy: -91843.0 ( -87.72 by residue)
QMean score : 0.490
(partial model without unconserved sides chains):
PDB file :
Tito_1NDC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NDC-query.scw
PDB file :
Tito_Scwrl_1NDC.pdb
: