Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKKDYYKLLGVDRNASTDEIKKAYKKLALKYHPDRNPGNKEAEEKFKEITAAYEVLSDSEKRAGYDRYGHEGASGGFDFSQGFGSAGDFSDIFNDFFGGEFGSSSRSKAKRSTTGVPGADLRYDLEITLEDAFKGIQAPIHYVTNVKCDMCQGRGSEGATKPVQCHTCQGSGRIRTQQ--G--FFTIERTCTTCYGEGEIIQ--NKCKKCNGSGRRRDEVNISVSIPKGIEEGAKVRVSGKGEAGAKGGKSGDLYVYVKITPHKIFTRNKADLHCKVPIRMTLAVLGGEIDVQSIDGAKIKVKVPEG--TQTSTKLRCKEKGMPYMNSYARGDLYVQIIVETLNPNNLTKKQIELLKALEEEENASIQQQSEGFFSKVKKK |
| 1NLT Chain:A ((8-235)) | -------------------------------------------------------------------------------------------------------------------PQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKG-AVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQAPD-VIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKD--PE----------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NLT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -75182 for 1461 contacts (-51.5/contact) +
2D Compatibility (PS) -24016 + (NN) -8178 + (LL) 7264
1D Compatibility (HY) -12000 + (ID) 2900
Total energy: -115012.0 ( -78.72 by residue)
QMean score : 0.436
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