Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MFDDKILLITGGTGSFGNAVMKRFLDSN-IKEIRIFSRDEKKQDDIRKKYNNSKLKFYIGDVRDSQSVETAMRDVDYVFHAAALKQVPSCEFFPVEAVKTNIIGTENVLQSAIHQNVKKVICLSTDKAAYPINAMGISKAMMEKVFVAKSRNIRSEQTLICGTRYGNVMASRGSVIPLFIDKIKAG-EPLTITDPDMTRFLMSLEDAVELVVHAFKHAETGDIMVQKAPSSTVGDLATALLELFEADNAIEIIGTRHGEKKAE------TLLTREEYAQCEDMGDYFRVPADSRDLNYSNYVETGNEKITQSYEYNSDNT-HILTVEEIKEKLLTLEYVRNELNDYKASMR |
| 2GN4 Chain:A ((18-344)) | MLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALEGVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALSTDKAANPINLYGATKLCSDKLFVSANNFKGSSQTQFSVVRYGNVVGSRGSVVPFFKKLVQNKASEIPITDIRMTRFWITLDEGVSFVLKSLKRMHGGEIFVPKIPSMKMTDLAKALAPNTPTKII----GIRPGEKLHEVMIPKDESHLALEFEDFFIIQPTISFQTPKDYT-LTKLHEK-GQKVAPDFEYSSHNNNQWLEPDDLLKLL------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GN4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -91157 for 2669 contacts (-34.2/contact) +
2D Compatibility (PS) -33643 + (NN) -8556 + (LL) 1980
1D Compatibility (HY) -26400 + (ID) 6000
Total energy: -163776.0 ( -61.36 by residue)
QMean score : 0.411
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