Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRKNILITGVHGYIGNALKDKLIEQGHQVDQINVR-----NQLWKSTSFK--DYDVLIHTAALVHNNSPQARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPTTNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKR-LPIIPNINNQRSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINMPSVLNKYFNKLSVFRKLFGNLTYSNTLYENNNALEVIPGKMSLVIADIMDETTTKDKA |
| 1VL0 Chain:A ((12-289)) | -HMKILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDITNVLAVNKFFNEKKPNVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA-EIVQISTDYVFDGEAK----EPITEFDEVNPQSAYGKTKLEGENFVKAL---NPKYYIVRTAWLYGDGNN-FVKTMINLGKTHDELKVVHDQVGTPTSTVDLARVVLKVIDEKNYGTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEEFP--------RPAKRPKYSVLRNYMLELTTGDITREWKESLKEYIDL------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1VL0.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -95966 for 2345 contacts (-40.9/contact) +
2D Compatibility (PS) -28538 + (NN) -3751 + (LL) 1288
1D Compatibility (HY) -6400 + (ID) 2650
Total energy: -136017.0 ( -58.00 by residue)
QMean score : 0.440
|
|
|