Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKAHKIFWLNLAAIIIISIVVSGGMFLAMKWEQIHLKDGLKKVLSTYPIKNLETLYEIDGHDNPHYENN-------DQDTWYIESSYSVVGSDELLKEDRMLLKVDKNTHKITGEYDTTTNDRKDATDSTYKSYPVKVVNNKIVFTKDVKDPALKQKIENNQFLIQSGDLTSILNSNDLKVTHDPTTDYYNLSGKLSNDNPNVKQLKRRYNIPSNASTKVELKGMSDLKGNNHQDQKLYFYFSSPGKNQIIYKESLTYNKLSEH |
4GJ8 Chain:A ((178-234)) | ---------------------------------------------------------LGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCLALVDTGASYISG------------------------------------------------------------------------------------------------------------------------------------------------------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4GJ8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -2573 for 179 contacts (-14.4/contact) +
2D Compatibility (PS) -5291 + (NN) -2117 + (LL) 12204
1D Compatibility (HY) -2800 + (ID) 1000
Total energy: -1577.0 ( -8.81 by residue)
QMean score : 0.288
|
|
|