Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLLYEGKAKRIFSTNQENELRVEYKDEVTAGNGAKKDTMAGKGRLNNQITSIIFKYLQENGIESHFIKQLSETEQLVKPVKIIPLEVVVRNIASGSITKRLGFENGEVFREPLVEFFYKNDALNDPLITDDHVKLLNIASDEDIEILKSKALKINNVLKQLMDAMNLKLVDFKIEFGKTETGQILLADEISPDTCRIWDKATNANFDKDVYRNNTGSLIETYQIFLNKLEDLK
2GQR Chain:A ((4-234))
QAELYRGKAKTVYSTENPDLLVLEFRNDTSAGDGARIEQFDRKGMVNNKFNYFIMSKLAEAGIPTQMERLLSDTECLVKKLDMVPVECVVRNRAAGSLVKRLGIEEGIELNPPLFDLFLKNDAMHDPMVNESYCETFGWVSKENLARMKELTYKANDVLKKLFDDAGLILVDFKLEFGLYK-GEVVLGDEFSPDGSRLWDKETLEKMDKDRFRQSLGGLIEAYEAVARRLGV--
General information:
TITO was launched using:
RESULT:
Template:
2GQR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62513 for 1825 contacts (-34.3/contact) +
2D Compatibility (PS) -24727 + (NN) -6183 + (LL) 292
1D Compatibility (HY) -20800 + (ID) 4750
Total energy: -118681.0 ( -65.03 by residue)
QMean score : 0.475
(partial model without unconserved sides chains):
PDB file :
Tito_2GQR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GQR-query.scw
PDB file :
Tito_Scwrl_2GQR.pdb
: