Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKPIGVIDSGVGGLTVAKEIMRQLPNETIYYLGDIGRCPYGPRPGEQVKQYTVEIARKLME-FDIKMLVIACNTATAVALEYLQKTLSIPVIGVIEPGARTAIMTTRNQNVLVLGTEGTIKSEAYRTHIKRINPHVEVHGVACPGFVPLVEQMRYSDPTITSIVIHQTLKRW-RNSES-DTVILGCTHYPLLYKPIYDYFGGKKTVISSGLETAREVSALLTFSNEHASYTEHPDHRFFATGDPTHITNIIKEWLNLSVNVERISVND
2JFN Chain:A ((26-247))
------VFDSGVGGLSVYDEIRHLLPDLHYIYAFDNVAFPYGEKSEAFIVERVVAIVTAVQERYPLALAVVACNTASTVSLPALREKFDFPVVGVV-PAIKPAARLTANGIVGLLATRGTVKRSYTHELIARFANECQIEMLGSAEMVELAEAKLHGE-DVSLDALKRILRPWLRMKEPPDTVVLGCTHFPLLQEELLQVLPEGTRLVDSGAAIARRTAWLL----EH----EAPDAK-------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2JFN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -183722 for 1878 contacts (-97.8/contact) +
2D Compatibility (PS) -23820 + (NN) -9882 + (LL) 2424
1D Compatibility (HY) -16800 + (ID) 3750
Total energy: -235550.0 ( -125.43 by residue)
QMean score : 0.575
(partial model without unconserved sides chains):
PDB file :
Tito_2JFN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JFN-query.scw
PDB file :
Tito_Scwrl_2JFN.pdb
: