Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLIDIQNLTIKNTCEKYLIKGIDLKIFSQQINALIGESGAGKSLIAKALLEYLPFDLSCTYDSYQFDGENISRLS--QYYGHTIGYISQNYAESFNDHTKLGKQLTAIYRKHYKSSKEEALSKIDKALSWVNLQSKDILNKYSFQLSGGQLERVYIASVLMLEPKLIIADEPVASLDALNGNQVMDLLQHIVLEHGQTLFIITHNLSHVLKYCQYIYVLKEGQIIERGNINHFKYEHLHPYTERLIKYRTQLKRDYYD
1JI0 Chain:A ((5-231))
-IVLEVQSLHVYYG-AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR----AQKGKIIFNGQDITNKPAHVINRMGIALVPEGRR--IFPELTVYENLMMGAYN-RK-DKEGIKRDLEWIFSLFPRL-KERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKIN-QEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNEM--------------------
General information:
TITO was launched using:
RESULT:
Template:
1JI0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -191284 for 1832 contacts (-104.4/contact) +
2D Compatibility (PS) -24115 + (NN) -7935 + (LL) 2140
1D Compatibility (HY) -12000 + (ID) 3050
Total energy: -236244.0 ( -128.95 by residue)
QMean score : 0.431
(partial model without unconserved sides chains):
PDB file :
Tito_1JI0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JI0-query.scw
PDB file :
Tito_Scwrl_1JI0.pdb
: