Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---M-KISTKGRYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRGAKGGYQLRVPAEEISAGDIIRLLEGPITFVES-IESEPPAQKQLWIR-MRDAVRDVLDNTTLKYLAEYVDTSEDLDGYM-FYI
3LWF Chain:A ((16-159))
YFQGMKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNGDPEKITAGDIIRTLEGPIVLVESMED-EEAAQRELWTRMR-NAVRDVLDQTTLSDLLKHSTDSEL-TDGYMFYI
General information:
TITO was launched using:
RESULT:
Template:
3LWF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84350 for 887 contacts (-95.1/contact) +
2D Compatibility (PS) -14545 + (NN) -3912 + (LL) 248
1D Compatibility (HY) -10000 + (ID) 4100
Total energy: -116659.0 ( -131.52 by residue)
QMean score : 0.601
(partial model without unconserved sides chains):
PDB file :
Tito_3LWF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LWF-query.scw
PDB file :
Tito_Scwrl_3LWF.pdb
: