Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVVVQRVKEA--SVTNDTLN------NQIKKGYCLLVGIGQNSTEQDADVIAKKIANARLFEDDNNKLNFNIQQMNGEILSVSQFTLYADVKKGNRPGFSNSKNPDQAVKIYEYFNDALRAY--GLTVKTGEFGTHMNVSINNDGPVTIIYESQDGKIQ
3KOD Chain:D ((1-159))
MRVVIQRVKGAILSVR-----KELEIISEIKNGLICFLGIHKNDTWEDALYIIRKCLNLRLWNNDNKTWDKNVKDLNYELLIVSQFTLFGNTKKGNKPDFHLAKEPNEALIFYNKIIDEFKKQYNDDKIKIGKFGNYMNIDVTNDGPVTIYIDTHD----
General information:
TITO was launched using:
RESULT:
Template:
3KOD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61903 for 1002 contacts (-61.8/contact) +
2D Compatibility (PS) -15635 + (NN) -7809 + (LL) 208
1D Compatibility (HY) -14800 + (ID) 3050
Total energy: -102989.0 ( -102.78 by residue)
QMean score : 0.479
(partial model without unconserved sides chains):
PDB file :
Tito_3KOD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KOD-query.scw
PDB file :
Tito_Scwrl_3KOD.pdb
: