Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDVKALKLMTLNDVLSQINGDMTLGIGTGSTMELLLPQMAQLIKERG-YNITGVCTSNKIAFLAKELGIKICEINDVDHIDLAIDGADEVDPSLNIIKGGGGALFREKVIDEMASRFVVVVDETKIVQYLGETFKLPVEVDKFNWYHILRKIESYADIKVERRVNEDVAFITDNGNYILDCKLPKGIDPYKFHEYLIHLTGVFETGYFLDMADQVIVGTQEGVKILEK
1UJ6 Chain:A ((3-226))
-RPLESYKKEAAHAAIAYVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEELAKREGIPLVDLPP-EGVDLAIDGADEIAPGLALIKGMGGALLREKIVERVAKEFIVIADHTKKVPVLG-RGPVPVEIVPFGYRATLKAIADLGGE-PELRMDGDEFYFTDGGHLIADCRFGPIGDPLGLHRALLEIPGVVETGLFVGMATRALVAGPFGVEELL-
General information:
TITO was launched using:
RESULT:
Template:
1UJ6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -142505 for 1966 contacts (-72.5/contact) +
2D Compatibility (PS) -24965 + (NN) -12985 + (LL) 632
1D Compatibility (HY) -16800 + (ID) 4000
Total energy: -200623.0 ( -102.05 by residue)
QMean score : 0.552
(partial model without unconserved sides chains):
PDB file :
Tito_1UJ6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UJ6-query.scw
PDB file :
Tito_Scwrl_1UJ6.pdb
: