Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----------------------------------------------------MNKWIK----GAVVFVGGFATITTFSLIY-HQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKAALKALNSKEMNYSKEETFTSPPMDPKTTPPKKDFSPKQLDL----LASRITPFKQSPKNYEENLIFPVDN--PNGIDSFTN------LKEKDIATNENKLLRTITADKMIP---AFLI-------TPISSQIAGKVIAQVESDIFA--------------SMGKAVLIPKGSKVIGYYSNNNKMGEYRLD--IVWSRIITPHGINIMLTNAKGADIKGYNGLVGELIERNF-----------QRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYL--LLQLMRQSGMGINQVVNQILRDKSKIAPIVVIREG-SRVFISPNTDIFFPIPRENEVIAEFLK--------- |
| 4K70 Chain:A ((2-483)) | PGSMEALVRALEEADHAVATVVQSRILEFFMAAGRETPAGVRGLWARALRLACRAYVETGTCEAAVLAENLAGLALWRLRHDWDEGTAPLLELLGVVNGDDTTAALTEAGLR-----TSAEFGPDAMFRLVSEWCAAFDEALAGAR---SADDVLAAPRVVPPEQTARALVQPRFATLYDMDFVQDGLRYVAQHTNWALPLALAVRQMQNEGLKPLTRALFALTIADEFFHDRQNPTLREQFAEAARAVDEAALVPVGEVNATPRTAVEVRVSAALAHGDAYVRELRPGTVARRLRTDQGVLALLDPGAQAV-HVAAAADLDHTQVDATGVWEAVQASASPLQVVEALVTA---GFTRRHCDLLERAVLDRAPRLTDAQRAVGCTAVVGGVVHRLLDDYGPGLDYVRAYTDVADTLEPLYGDVTAALGLPEKGVEHVVRHCMAPRPPTEHVGAARAALLREVAAAERRAGLAHSAAREALNTWLAFRAQSRWGL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4K70.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -14338 for 2850 contacts (-5.0/contact) +
2D Compatibility (PS) -37745 + (NN) -10868 + (LL) 120
1D Compatibility (HY) -11200 + (ID) 3050
Total energy: -77081.0 ( -27.05 by residue)
QMean score : 0.185
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