Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMREILTNRFFPSLFKKRLDFSNRVVLGLGSNLKNPLKILKSCFLYFKNHSKIGKIFSSPIYINPPFGYTNQPNFYNATIILKTSLGLRHFFALVFYIERRFGRARKRDFKDAPRTLDIDIIAFNQVILRQNDLTLPHPKWSERDSVLVPLTLQQILFKREEW
1G4C Chain:B ((5-128))
--------------------------IAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQGRVRKAE-RWGPATLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDG
General information:
TITO was launched using:
RESULT:
Template:
1G4C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80157 for 884 contacts (-90.7/contact) +
2D Compatibility (PS) -13092 + (NN) -6157 + (LL) 2444
1D Compatibility (HY) -6800 + (ID) 2000
Total energy: -105762.0 ( -119.64 by residue)
QMean score : 0.532
(partial model without unconserved sides chains):
PDB file :
Tito_1G4C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1G4C-query.scw
PDB file :
Tito_Scwrl_1G4C.pdb
: