Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------MIRTPK---HLTKQESVNLGAYYT-----PPYLVDCAYKLLKKHVGIEN-----YTLLD---TACG---NKEFLKLHHPKKIGADIDPKCDALIINA----LANPKRENYGISQDEP------------LIIVGNPP--------------YNDRTSFIKQDIKNKDFIFEIDND---LKSRDLGISFLKSFAILKPA--------------FICVLHPLSY---------------LIKEANFKQLKLFKDHYR-LLDAFVVSSKSFTKSN-----------------------------EFP--------IVIALYERGRMDYAG----IRRFVFPTDCDTTLCLNDFDYIANYVDKYPNAKKV--GACVGYFFPMRDINAL-KRNKTFLNAPSENAVRISQDKLIYYQYIH----YFKEIAPKIPYYFGNLDIIIDH-FAFLEIKDAFLKDKRARLEYFKKLFQGHPCEFD |
| 4U1F Chain:A ((17-496)) | PSSSLKSWLMDDKVRDQFVLQDDVKTSVFWNSMFNEEDSLVESRENWSTNYVRFSPKGTYLFSYHQQGVTAWGGPNFDRLRRFYHPDVRNSSVSPNEKYLVTFSTEPIIVEEDNEFSPFTKKNEGHQLCIWDIASGLLMATFPVIKSPYLKWPLVRWSYNDK--YCARMVGDSLIVHDATKNFMPLEAKALKPSGIRDFSFAPEGVKLQPFRNGDEPSVLLAYWTPETNNSACTATIAEVPRGRVLKTVNLVQVSNVTLHWQNQAEFLCFNVERHTKSGKTQFSNLQICRLTERDIPVEKVELKDSVFEFGWEPHGNRFVTISVHEVADMNYAIPANTIRFYAPETKKRWSLVKEIPKTFANTVSWSPAGRFVVVGALVGPNMRRSDLQFYDMDYPGEKNINDNNDVSASLKDVAHPTYSAATNITWDPSGRYVTAWSSSLKHKVEHGYKIFNIAGNLVKEDIIA-GFKNFAWRPRP---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4U1F.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -63477 for 1894 contacts (-33.5/contact) +
2D Compatibility (PS) -34474 + (NN) 14154 + (LL) 416
1D Compatibility (HY) -12000 + (ID) 3100
Total energy: -98481.0 ( -52.00 by residue)
QMean score : 0.176
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