Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----MPYSSKVQSLSESATIAISTLAKELKSQGKDILSFSAGEPDFD--TPQAIKDAAIKALNDG--FTKYTPVAGIPELLKAIAFKLKKENNLDYE---PSEILVSNGAKQSLFNAIQALIGEGDEVVIPVPFWVTYPELVKYSGGVSQFIQT--DEKSHFKITPKQLKDALSPKTKMLILTTPSNPTGMLYSKAELEALGEVLKDTKVWVLSDEIYEKLVYKGEFVSCAAVSEE-MKKRTITINGLSKSVAMTGWRMGYAAS-KDKKLVKLMSNLQSQCTSNINSITQMASIVAL--EGLVDKEIETMRQAFEKRCHLAHAKINAIEGLN--ALKPDGAFYLFINIGSLCG---GDSMRFCHELLEKEGVALVPGKAFGLEGYVRLSFACSEEQIEKGIERIARFVKSKG |
| 1BJW Chain:A ((1-382)) | MRGLSRRVQAMK---PSATVAVNAKALELRRQGVDLVALTAGEPD--FDTPEHVKEAARRALA--QGKTKYAPPAGIPELREALAEKFRRENGL---SVTPEETIVTVGGKQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRF-AGGV-VVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGR----VAPEHTLTVNGAAKAFAMTGWRIGYACGP--KEVIKAMASVSSQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL-GLKAV--RPSGAFYVLMDTS----PIAPDEVRAAERLLE-AGVAVVPGTDFAAFGHVRLSYATSEENLRKALERFARVL---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1BJW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -222920 for 3102 contacts (-71.9/contact) +
2D Compatibility (PS) -40573 + (NN) -28844 + (LL) 948
1D Compatibility (HY) -25200 + (ID) 7700
Total energy: -324289.0 ( -104.54 by residue)
QMean score : 0.606
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