Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKTNGLFKMWGLFLVLIALVFNACSDSHKEKKDALEVIKQRGVLKVGVFSDKPPFGSVDSKGNYQGYDVVIAKRMALDLLG----DENKIEFIPVEASARVEFLKANKVDIIMANFTRTKEREKVVDFANPYMKVALGVIS-KDGVIKNIEELKDKELIVNKGTTADFYFTKNY----PNIKLLKFEQNTETFLALLNNKAIALAHDNTLLLAWVKQHPE-FKLGIT-SLGDKDVIAPAIKKGNPKLLEWLNNEIDSLISSDFLKEAYQETLEPIYGDGIKPEEIIFE |
| 2VHA Chain:A ((8-253)) | --------------------------------STLDKIAKNGVIVVGHRESSVPFSYYDNQQKVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPITSQNRIPLLQNGTFDFECGSTTNNVERQKQAAFSDTIFVVGTRLLTKKGGDIKDFADLKGKAVVVTSGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESGRAVAFMMDDALLAGERAKAKKPDNWDIVGKPQSQEAYGCMLRKDDPQFKKLMDDTIAQVQTSGEAEKWFDKWFKNPIPPKNLNMNFELS |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2VHA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -104460 for 1963 contacts (-53.2/contact) +
2D Compatibility (PS) -26158 + (NN) -15261 + (LL) 2664
1D Compatibility (HY) -12000 + (ID) 2350
Total energy: -157565.0 ( -80.27 by residue)
QMean score : 0.561
|
|
|