Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDSTLKHLAIIMDGNGRWAKLKNKARAYGHKKGVKTLKDITIWCANHKLECLTLYAFSTENWKRPKSEVDFLMKMLKKYLKDERSTYLDNNIRFRAIGDLEGFSKELRDTILRLENDTRYFKDFTQVLALNYGSKNELSRAFKSLLENPPNHINNIESL-ENEISHRLDTHDLPEVDLLLRTGGEMRLSNFLLWQSSYAELFFTPILWPDFTPKDLENIISDFYKRVRKFGELKC
4U82 Chain:A ((26-253))
-----EHIAIIMDGNGRWAKKRKMPRIKGHYEGMQTIKKITRIASDIGVKYLTLYAFSTENWSRPESEVNYIMNLPVNFLKTFLPELIEKNVKVETIGFTDKLPKSTIEAINNAKEKTANNTGLKLIFAINYGGRAELVHSIKNMFDELHQQGLNSDIIDETYINNHLMTKDYPDPELLIRTSGEQRISNFLIWQVSYSEFIFNQKLWPDFDEDELIKCIKIYQSRQRRFGGLS-
General information:
TITO was launched using:
RESULT:
Template:
4U82.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93901 for 1772 contacts (-53.0/contact) +
2D Compatibility (PS) -23611 + (NN) -5068 + (LL) 396
1D Compatibility (HY) -18400 + (ID) 4450
Total energy: -145034.0 ( -81.85 by residue)
QMean score : 0.487
(partial model without unconserved sides chains):
PDB file :
Tito_4U82.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4U82-query.scw
PDB file :
Tito_Scwrl_4U82.pdb
: