Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTMENSSNVAQSSKWKLPIMIAGFVIVVALVFYFVFEGTKNDITIVNAGEKIESRTHAKTVSEALDEAGIKVSERDEIAPGKNAEIKDGMEIKYLPARQITINDNGTKKDVWSTKANVADLLKDE----NITTRPQDVLNVALD-TKLKNGLEVNINRAIQLSLQNGAKKDTVWTTKTKVSDLLAEKNIKLDQDDRVSPAKDSNLKEKMTVEVTYVNSKAEKKNEQVKFETVYKEDDSLNKGVEKVVQEGKNGKKVVEYKVTFENGKEKKRDVIKENVTSNKTDKVVVRGTKEKVVATPVSNVSTSSATSSSSSSASSTPSGGKTYKMESTAYSGGGTTAYGINLSANPGLKVIAVDPRIIPLGSKVWVEGYGE---------AIAGDTGGAIKGN-IVDVYFP-NESQCYSWGRRMVTVKVLN------------ |
| 2G5D Chain:A ((40-441)) | PDRPAGIPDPAGTTVAGGGAVYTVVPHLSMPHWAAQDFAKSLQSFRLGCANLKNRQGWQDVCAQAFQT-----------PIHSFQAKRFFERYFTPWQVAGNGSLAGTVTGYYEPVLKGDGRRTERARFPIYGIPDDFISVPLPLVRIRQTGKNSGTHTADLSRFPITARTTAIKGRFE--------GSRFLPYHTRNQINGGALDGK-APILGYAEDPVELFFMHIQGSGRLKTPSG---KYIRIGYADKNEHPYVSIGRYMADKGYLKLG--------------------------QTSMQGIKAYMRQNPQRLAEVLGQNPSYIFFRE--LDGPVGALGTPLMGE---YAGAIDRHYITLGAPLFVATAHPVTRKALNRLIMAQDTGSAIKGAVRVDYFWGYGDEAGELAGKQKTTGYVWQLLPNGMKPEYRP |
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General information:
TITO was launched using:
| RESULT:
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Template: 2G5D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 99972 for 2786 contacts (35.9/contact) +
2D Compatibility (PS) -37572 + (NN) 2724 + (LL) 4152
1D Compatibility (HY) 0 + (ID) 2600
Total energy: 66676.0 ( 23.93 by residue)
QMean score : 0.132
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