Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LITHVIWDMGETLNTVPNTRYDHYPLDTYPEVVLRKDAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGIIDYFDFIYASNSELQPGKMEKPDKTIFDFTLNELQIDKTEAVMVGNTFESDIIGANRAGIHAIWLQNPEVCLQDERQPLVAPPFVIPVWDLADVPEALLLLKKISS
2NO4 Chain:A ((103-234))
------------------------------ELSAYPDAAETLEKLKSAGYIVAILSNGNDE---MLQAALKASKLDRVLDSCLSADDL----KIYKPDPRIYQFACDRLGVNPNEVCFVSSNA-WDLGGAGKFGFNTVRINRQGNPPEYE---FAPLKHQVN--SLSELWPLLAK------
General information:
TITO was launched using:
RESULT:
Template:
2NO4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64706 for 971 contacts (-66.6/contact) +
2D Compatibility (PS) -13341 + (NN) -2689 + (LL) 2580
1D Compatibility (HY) -6000 + (ID) 1650
Total energy: -85806.0 ( -88.37 by residue)
QMean score : 0.486
(partial model without unconserved sides chains):
PDB file :
Tito_2NO4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NO4-query.scw
PDB file :
Tito_Scwrl_2NO4.pdb
: