Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDNKLEFTTIDEYITQAPPETKEVLQKI----RETIKAAAPEATEKISYQMPTFYLEGN-LVHFAVAKNHYGFYPASSGIAAFESKLGNYKHSKGAVQFPIKEEVPYELIKEMTLFRLAENKQKAAEKLAKKKKK
4EYT Chain:A ((10-106))
--------------------KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDGQAMIRF----------QNSDEQRLAIQKLLN--HNNNKLQIEIRGQI-CDVIST-----IPEDEEKNYWNYIKFKKN
General information:
TITO was launched using:
RESULT:
Template:
4EYT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27821 for 568 contacts (-49.0/contact) +
2D Compatibility (PS) -10101 + (NN) -2426 + (LL) 2636
1D Compatibility (HY) -7600 + (ID) 1200
Total energy: -46512.0 ( -81.89 by residue)
QMean score : 0.394
(partial model without unconserved sides chains):
PDB file :
Tito_4EYT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4EYT-query.scw
PDB file :
Tito_Scwrl_4EYT.pdb
: