Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVDGRESNALRNIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWISAEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQADGGTRTASITGAFIAMVMAIAKLDEAVPFAKFPVKDFLAATSVGVLEEGGTVLDLNYVEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGISELIEIQKETLGDKVTARIKGE
3DD6 Chain:A ((11-254))
MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVTAEYAMIPRATEQRTIRESS-GKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEEQGVVLDLNYAEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDIQKEALGDIVSHI----
General information:
TITO was launched using:
RESULT:
Template:
3DD6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127009 for 2044 contacts (-62.1/contact) +
2D Compatibility (PS) -26175 + (NN) -9199 + (LL) 264
1D Compatibility (HY) -29200 + (ID) 8650
Total energy: -199969.0 ( -97.83 by residue)
QMean score : 0.567
(partial model without unconserved sides chains):
PDB file :
Tito_3DD6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DD6-query.scw
PDB file :
Tito_Scwrl_3DD6.pdb
: