Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LSKIPVIVIVGPTAVGKTSLSIELAKKLDGEIISGDSMQVYRGLDIGTAKITPEEMDEIKHYLIDVTDPSEPFTAAKFQTETRKWIETIHQAGKLPIIVGGTGLYIQSVFYDYDFGNVSEDK-AYRAELE---QLN-KTLLWQMLEQQDPESAAQIHENNKRRVIRALEVMHLTGKPFSEYQVHNVLNDTYKPLFLGLDLDRALLYERINQRVNLMFEEGLVTEAKKLYDQH--------LVDVPAVCGIGYKELFPYFEGKS-SLEEAKELIQKNSRHFAKRQLTWFRNRM------EIDWIQAGVS-----TTEAEALNKAETFLSVK |
| 3EPH Chain:A ((2-328)) | ---KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFNKRV--DTKSSERKLTRKQLDILESTDPDVIYNTLVKCDPDIATKYHPNDYRRVQRMLEIYYKTGKKPSETFNEQKITLKFDTLFLWLYSKPEPLFQRLDDRVDDMLERGALQEIKQLYEYYSQNKFTPEQCENGVWQVIGFKEFLPWLT---VKLEDCIERMKTRTRQYAKRQVKWIKKMLIPDIKGDIYLLDATDLSQWDTNASQRAIAISNDFIS-- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3EPH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -125289 for 2258 contacts (-55.5/contact) +
2D Compatibility (PS) -32605 + (NN) -18277 + (LL) 292
1D Compatibility (HY) -20000 + (ID) 5100
Total energy: -200979.0 ( -89.01 by residue)
QMean score : 0.465
|
|
|