Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKWNVYLTKGEYEPWWFFEEWETSIQEDFSFSDKEAAFLKYQ------ELAEALLSNYPKHQTKKDCLLAAWNEEEVEYCEDCED---------------DIQTFHGLILFFEGEVYQPT-PEEKETIFKRVLTFA----------
2EIA Chain:A ((17-146))
--------------PRG-YTTWVNTIQTNGLLNEASQNLFGILSVDCTSEEMNAFLDVVPGQAGQKQILLDAIDKIADDWDNRHPLPNAPLVAPPQGPIPMTARFIRGLGVPRERQMEP--AFDQFRQTYRQWIIEAMSEGIKVMIG
General information:
TITO was launched using:
RESULT:
Template:
2EIA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 1171 for 625 contacts (1.9/contact) +
2D Compatibility (PS) -10776 + (NN) -7755 + (LL) 1148
1D Compatibility (HY) -3200 + (ID) 800
Total energy: -20212.0 ( -32.34 by residue)
QMean score : 0.488
(partial model without unconserved sides chains):
PDB file :
Tito_2EIA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2EIA-query.scw
PDB file :
Tito_Scwrl_2EIA.pdb
: