Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIAIFASGSGSNFQALVDDEF---IKPYVKLLVCDKPNAYVLERANKHDIPVFLFEAKNYPDKEAFETEILLELRRLEIDLLVLAGYMRLIGPTLLAEFPEQIVNLHPSLLPEFKGKDAIGQAIQANVSGTGVTAHFVDAGMDTGPIIDQVKVTIETAETTDTLAEKIHQVEHIFYPKVIR----GLIQNGGND
1MEN Chain:C ((14-205))
--VAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEDVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKIFPAALQLVASGTVQLGEN-
General information:
TITO was launched using:
RESULT:
Template:
1MEN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -146670 for 1485 contacts (-98.8/contact) +
2D Compatibility (PS) -20505 + (NN) -14039 + (LL) 52
1D Compatibility (HY) -15600 + (ID) 3250
Total energy: -200012.0 ( -134.69 by residue)
QMean score : 0.533
(partial model without unconserved sides chains):
PDB file :
Tito_1MEN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MEN-query.scw
PDB file :
Tito_Scwrl_1MEN.pdb
: