Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKEELLKRFTKYVKVDTQSNEESTVCPTTPGQMELANILVTELKEIGMQEVTVD-EFGYVMATLPSNSTKEVPVIGFLAHLDTATDLTGKNVQPQVHENYDGKDIILNKDLNVVLSPKQFPELAGYKGKTLITTDGTTLLGADDKAGITEIMVAMNHLINHPEIKHGKIRIAFTPDEEIGRGPERFDVEA-FG-AKYAYTMDGGP---LGELEYES----FNAASAKITFKGNSVHPGTAKNKMVNAVKMAMEFDARIPKDEAPEYTEGYEGFYHLISLNG------DVEQARSYYIIRDFDHLKFVERKTHIASIAKELEEKYGEGSVELKLNDQYYNMREKIEPVKEIVDIVSAAMRNLDIEP-KISPIRGGTDGAQLSYKGLPT--PNIFGGG-ENFHGKFEYVALESMVKATEVIIEVARLFEEKE |
| 1YSJ Chain:A ((31-402)) | -HTRLINMRRDLHEHPELSFQE----------VETTKKIRRWLEEEQIEILDVPQLKTGVIAEIKGR--EDGPVIAIRADIDALPIQE---Q---TNLPFAS-K-----------------------VDGTMHACGH----DFHTASIIGTAMLLNQR---RAELKGTVRFIFQPAEEIAAGARKVLEAGVLNGVSAIFGMHNKPDLPVGTIGVKEGPLMASVDRFEIVIKGK---------NSIDPIAAAGQIISG-----------LQNAVVSITRVQAGTSWNVIPDQAEMEGTVRTFQKEARQAVPEHMRRVAEGIAAGYG-AQAEFKWFPYLPS----VQNDGTFLNAASEAAARLGYQTVHAEQSPGGEDFALYQE-KIPGFFVWMGTNGTEEWHHPAFTLDEEALTVASQYFAELAVIVLET- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YSJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -66572 for 2834 contacts (-23.5/contact) +
2D Compatibility (PS) -35671 + (NN) -10883 + (LL) 3552
1D Compatibility (HY) -6800 + (ID) 2950
Total energy: -119324.0 ( -42.10 by residue)
QMean score : 0.509
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