Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKIVLLLALITVVLTVGACSDNKKETEEKANKTEEESATFLTTISTKDFKQKMADKTTGFVYVGRPTCEDCQAFQPILKKELKKRQPDQKMAYYNTDKASEKSRDNMIALLEKMDIDSVPTMVYLKDGK----VASTYAATDEPAKLTNWMNKVSGEVSE
1A8L Chain:? ((1-119))
MGLI----------------------SDADKKVIKEE------------FFSKMVNPVKLIVFVRKDHCQYCDQLKQLVQ-ELSELTDKLSYEIVDFDT------PEGKELAKRYRIDRAPATTITQDGKDFGVRYFGLPAGHEFAAFLEDIVDVSREET-
General information:
TITO was launched using:
RESULT:
Template:
1A8L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17067 for 805 contacts (-21.2/contact) +
2D Compatibility (PS) -12461 + (NN) -9334 + (LL) 3496
1D Compatibility (HY) -6000 + (ID) 1350
Total energy: -42716.0 ( -53.06 by residue)
QMean score : 0.536
(partial model without unconserved sides chains):
PDB file :
Tito_1A8L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1A8L-query.scw
PDB file :
Tito_Scwrl_1A8L.pdb
: