Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVIVACGSGVATSQTVASKVERILKEKGVRATVEAVDIKSL-----EQHIKTSDVYVAITKANKEFDIPTLNGIAFLTGMGMDEETEKLLNALK------------------------------------------------
4C6S Chain:A ((5-146))
EEFVCISCVEEVRYS--FVSHLSEALRRKGINNVVVDVDIDDLLFKESQAKIEKAGVSVMVLPGNCDPSEVWLDKFAKVLECQRNNKDQAVVSVLYGDSLLRDQWLSELDFRGLSRIHQSRKECSDSILVEEIVRDVYETHFYV
General information:
TITO was launched using:
RESULT:
Template:
4C6S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32923 for 604 contacts (-54.5/contact) +
2D Compatibility (PS) -9560 + (NN) -4129 + (LL) 172
1D Compatibility (HY) -6800 + (ID) 1000
Total energy: -54240.0 ( -89.80 by residue)
QMean score : 0.337
(partial model without unconserved sides chains):
PDB file :
Tito_4C6S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4C6S-query.scw
PDB file :
Tito_Scwrl_4C6S.pdb
: