Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKKVGTDRVKRGMAQMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPSDIRAAGGVARMADPRIVEEVMKAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADDEFHLLKSDFTVPFVCGCRDIGEALRRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNGQIRQIAGMTDDELMVAAKNFGAPYELIKEIKTLGKLPVVNFAAGGVATPADAALMMELGADGVFVGSGIFKSDNPAKFASAIVQATTYYTDYELIGKLSKELGSPMKGIEMSRLNPEDRMQDRSF
4WY0 Chain:G ((16-281))
------TDRVKRGMAEMQKGGVIMDVVNAEQAKIAEAAGAVAVMALER---------GVARMADPTVIEEVMNAVSIPVMA-VRIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQLGAPVEVLREIKRLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKSENPEKYARAIVEATTHYEDYELIAHLSKGL-----------------------
General information:
TITO was launched using:
RESULT:
Template:
4WY0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -169713 for 2223 contacts (-76.3/contact) +
2D Compatibility (PS) -28310 + (NN) -16355 + (LL) 1780
1D Compatibility (HY) -32000 + (ID) 10300
Total energy: -254898.0 ( -114.66 by residue)
QMean score : 0.647
(partial model without unconserved sides chains):
PDB file :
Tito_4WY0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4WY0-query.scw
PDB file :
Tito_Scwrl_4WY0.pdb
: