Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNDVLTLLRNHRSFRKYKKGVEIPEEKLDAIIRAAQAAPSWINGQHYSIIAIKDQERKNKMAELC-GNQPYIAECSVFLCFVADFHRVKVASDMHGK-------------SF--QIAG------EEDLLMVAATDIGLCMQNALTAAESLDYGTICIGGLRRNITATAGFLNLPE-FVMPVVGLCIGVPDVEAPVKPRLPKEAVYFEETYQTDVMPLLEAYDQEIIPFSEREGFVSYTERLAKFYDRPYYPNLTEQIKERGFLGGK
3GBH Chain:A ((9-212))
-NDFNEVLNSRKSVKVFDENYKIPREEMDEIITKATKAPSSVNMQPWRIAVVQSDEMKEKVKESFGFNSRQLTTSSAMLIIFGDLQNYEKAEQIYGDAVEQQLMTEDIKAQLLDWILPYYKNLSREGMKDIVNIDSSLMAMQLMLTAKAHGYDTNPIGGF--DKENIADIIGYDSDRYVPVLAIAIGKKAQDAHDSVRLPIDDVREF-----------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3GBH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -151338 for 1309 contacts (-115.6/contact) +
2D Compatibility (PS) -19611 + (NN) -11541 + (LL) 4240
1D Compatibility (HY) -9200 + (ID) 2350
Total energy: -189800.0 ( -145.00 by residue)
QMean score : 0.529
(partial model without unconserved sides chains):
PDB file :
Tito_3GBH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GBH-query.scw
PDB file :
Tito_Scwrl_3GBH.pdb
: