Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKNYKAYLIDLDGTMYRGAEVIPEAIIFIENLKRAGLPYLFVTNNSTKTPGQVAEHLTD-MGIQAVSDDVFTTSQATVQFMMEQKREKTVYVIGERGIKQELTDNGFEITSSNPAFVVVGLDREVDYEKFSKAALAVR-GG-AMFISTNGDAAIP-TE-RGLLPGNG-SITSVVSVATETAPIFIGKPESIIMEQALAKLGVHKDEAIMVGDN-YETDIMAGINYGMDTLIVHTGFTSKEALLTKEIQPTYAVTKLTDWEFN
1YV9 Chain:A ((2-256))
SLDYQGYLIDLDGTIYLGKEPIPAGKRFVERLQEKDLPFLFVTNNTTKSPETVAQRLANEFDIHVPASLVYTATLATIDYMKEANRGKKVFVIGEAGLIDLILEAGFEWDETNPDYVVVGLDTELSY--EKVVLATLAIQKGALFIGTNPDKNIPTERGLLPGAGSVVTFVETATQ---TKPVYIGKPKAIIMERAIAHLGVEKEQVIMVGDNYE-TDIQSGIQNGIDSLLVTSGFTPKSAVPTLPTPPTYVVDSLDEWTF-
General information:
TITO was launched using:
RESULT:
Template:
1YV9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125364 for 2114 contacts (-59.3/contact) +
2D Compatibility (PS) -26607 + (NN) -11625 + (LL) 492
1D Compatibility (HY) -21200 + (ID) 5600
Total energy: -189904.0 ( -89.83 by residue)
QMean score : 0.530
(partial model without unconserved sides chains):
PDB file :
Tito_1YV9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YV9-query.scw
PDB file :
Tito_Scwrl_1YV9.pdb
: