Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSDLINIQKKLLPDVLMIMQKRYQILRSIYFSEPVGRRTLAGMLGMSERVLRGEVEFLKAQGLVEIASSGMTVTKEGLVVFRDLESVMNQLSGLHSMEEQLAKKLQIKKCLVVQGDSDDTPWVREEMGRVAVEQLDMALTEKRNIVAVMGGSTMATVAEMMTTDFAKGRELLFVPGRGGIGEDLDNQ--ANTICDKMATKTNTKHRVLYVPEQLG-EEAYRSLLKEPAIQEGLRLVQSANAIILGIG---DALAMAKRRHTGEDVLEKIIHRKAVGEAFGYYFDEQGEVVH---KVPTFGLQFEDLAQIPHIIAVAGGTSKAKAIKSYMKSAPKNTILITDEGAAKSLLKGSNTLLK |
2W48 Chain:A ((4-315)) | ----------------SDDIRLIVKIAQLYYEQDMTQAQIARELGIYRTTISRLLKRGREQGIVTI-------------------AINYDYNENLWLEQQLKQKFGLKEAVVA----SSEEEQLSAMGQHGALLVDRLLEPG-DIIGFSWGRAVRSLVENLPQR-SQSRQVICVPIIGGPSGKLESRYHVNTLTYGAAARLKAESHLADFPALLDNPLIRNGIMQSQHFKTISSYWDSLDVALVGIGSPAIRDGANWHAFYGSEESDDLNARHVAGDICSRFYDINGGLVDTNMSEKTLSIEMAKLRQARYSIGIAMGEEKYSGILGALHGRYIN-CLVTNRETAELLLK------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2W48.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -160770 for 2416 contacts (-66.5/contact) +
2D Compatibility (PS) -32370 + (NN) -13571 + (LL) 3088
1D Compatibility (HY) -11600 + (ID) 2850
Total energy: -218073.0 ( -90.26 by residue)
QMean score : 0.497
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