Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLTKKPEINTILQVTPDPHSLPAAMATEDLHVYYGDNHAIKGVDLTFPENKVTALIGPSGCGKSTYLRALNRMNDEIDGCRMEGQILYDGININRKEVDLYNVRKEIGMVFQKPNPFTK-SIYENVAFGLKRHGMKNKKEIMERVEKSLRRAALWDEVKDDLGKSALSLSGGQQQRLCIARAVAMQPKVLLLDEPASALDPISTSKIEDLINEL--KNKYTIIIVTHNMQQAARVSDYTSFFYLGEVVEFSGTSELFTNPQEKQTEDYISGNFG |
1VCI Chain:A ((16-251)) | ---------------------------ENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT-----EGRIYFG----DRDVTYLPPKDRNISMVFQ------HMTVYENIAFPL-------KKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVATFIGA--- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1VCI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -87516 for 1735 contacts (-50.4/contact) +
2D Compatibility (PS) -24322 + (NN) -10635 + (LL) 2104
1D Compatibility (HY) -15600 + (ID) 3750
Total energy: -139719.0 ( -80.53 by residue)
QMean score : 0.489
|
|
|