Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKVLTFLLCSLYFVSIPAISTEEPLTLSQNRRYALTQTVVDKEMYFDAIPERPTTKIEISSFQDEALTITGETLVPNTLLSIVSLTINSNGIPVFTLSNGQFIKASREAIFNDLVSKQQSVSLDYWLKPSFVTYEAPYTNGVSEVKNNLKPYSRVHLVEQAETEHGIYYKTDSGFWISVEDLSVADNRMAKVQEVLLEKYNKDKYGIYIKQLNTQTVAGINIDRSMYSASIAKLATLYASQEQVKLGKLSLDSKFEYKDNVNQFPNSYDPSGSGKLEKK-ADHKLYTVKELLEATAKESDNVATNMLGYYVNNQYDSMFQTQVDTISGM-----H----------WDMKKRQISPQAAGKMMEAIYYQN-------GDIVNYLSKTDFDNTRIPKNIP--VKVAHKIGDA------YDYKHDAAIVYA--EQPFIMIIFTDKSS------YDDITKIADDVYQVLK |
| 1E25 Chain:A ((5-272)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LKEQIESIVIG--KKATVGVAVWGPDDLEPLLINPFEKFPMQSVFKLHLAMLVLHQVDQGKLDLNQTVIVNRAKV-LQNT----WAPIMKAYQGDEFSVPVQQLLQYSVSHSDNVACDLLFELVGGP--AALHDYIQS-MGIKETAVVANEAQMHADDQVQYQNWTSMKGAAEILKKFEQKTQLSETSQALLWKWMVETTTGPERLKGLLPAGTVVAHKTGTSQIKAGKTAATNDLGIILLPDGRPLLVAVFVKDSAESSRTNEAIIAQVAQTAYQFEL |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1E25.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -81560 for 1872 contacts (-43.6/contact) +
2D Compatibility (PS) -24506 + (NN) -8024 + (LL) 13656
1D Compatibility (HY) -10800 + (ID) 2250
Total energy: -113484.0 ( -60.62 by residue)
QMean score : 0.433
|
|
|