Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPHLSKEAFKKQIKNGIIVSCQALPGEPLYTESGGVMPLLALAAQEAGAVGIRANSVRDIKEIQEVTNLPIIGIIKREYPPQEPFITATMTEVDQLASLDIAVIALDCTLRERHDGLSVVEFIQKIKRKYPEQLLMADISTFEEGKNAFEAGVDFVGTTLSG--YTDYSRQEEG--PDIELLNKLCQAG-IDVIAEGKIHTPKQANEINHIGVAGIVVGGAITRPKEIAERFISGLS
1Y0E Chain:A ((2-221))
-----------MLPHGLIVSCQALPDEPLHSS--FIMSKMALAAYEGGAVGIRANTKEDILAIKETVDLPVIGIVKRDYDHSDVFITATSKEVDELIESQCEVIALDATLQQRPK-ETLDELVSYIRTHAPNVEIMADIATVEEAKNAARLGFDYI--GTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMDLGVHCSVVGGAITRPKEITKRFVQVME
General information:
TITO was launched using:
RESULT:
Template:
1Y0E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -148750 for 1823 contacts (-81.6/contact) +
2D Compatibility (PS) -23316 + (NN) -11381 + (LL) 340
1D Compatibility (HY) -18400 + (ID) 4950
Total energy: -206457.0 ( -113.25 by residue)
QMean score : 0.654
(partial model without unconserved sides chains):
PDB file :
Tito_1Y0E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y0E-query.scw
PDB file :
Tito_Scwrl_1Y0E.pdb
: