Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MITLEKFIDHLNVEEVLFTFFTKLISILLLIIAFVIVRQVINYLFEKTVNRSLAFSRQKVARQKTLAKLSHNVLNYTLYFFLFYWILSILGVPISSLLAGAGIAGVAIGLGAQGFLSDVVNGFFILLENQFDVGDIINVGTVSGTVTNVGIRTTQIHDFDGTLHFIPNRNI---TIVSNKSRSNMRAQIDIPLFVHTNLDQISDIVTKINEEYVSKHPAIVGEP-TVFGPTTNANGQFVYRINIFTQNGAQFDIYAEFYKLYQKAILEEGIDLPTYNFSNNHSR-
2VV5 Chain:A ((25-280))
----------------LSYAVNIVAALAIIIVGLIIARMISNAVNRLMISRKI---------DATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLVVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQVKQILTNIIQS----EDRILKDREMTVRLNELGASSINFVVRVWSNSGDLQNVYWDVLERIKREFDAAGISFPYPQMDVNFKRV
General information:
TITO was launched using:
RESULT:
Template:
2VV5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -158115 for 1617 contacts (-97.8/contact) +
2D Compatibility (PS) -26834 + (NN) -10555 + (LL) 3088
1D Compatibility (HY) -21600 + (ID) 2850
Total energy: -216866.0 ( -134.12 by residue)
QMean score : 0.447
(partial model without unconserved sides chains):
PDB file :
Tito_2VV5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VV5-query.scw
PDB file :
Tito_Scwrl_2VV5.pdb
: