Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKIRLSKFIKMIVVILFLISVAASFYFFHVAQVRDDKSFISNGQRKPGNSLYAYDKSFDKLLKQKIEMTNQNIKQVAWYVPAAKKTHKTAVVVHGFANSKENMKAYGWLFHKLGYNVLMPDNIAHGESHGQLIGYGWND-RENIIKWTEMIVDKNPSSQITLFGVSMGGATVMMASGEKLPS-QVVNIIEDCGYSSVWD-------ELK-FQ---AKE--------MYG-LPAFPLLYE------------VSTISK-I----RAGF----SYGQASSVEQLKKNNLPALFIHGDKDNFVPTSMVYDNYKATAGKKELYIVKGAKHAKSFETEPEKYEKRISSFLKKYEK |
1ZOI Chain:A ((9-276)) | ------------------------------------------------------------------------GVQIFYKDWGPR--DAPVIHFHHGWPLSADDWDAQLLFFLAHGYRVVAHDRRGHGRSSQVWDGHDMDHYADDVAAVVAH----LGIQGAVHVGHSTGGGEVVRYMA-RHPEDKVAKAVLIAAVPPLMVQTPGNPGGLPKSVFDGFQAQVASNRAQFYRDVPAGPFYGYNRPGVEASEGIIGNWWRQGMIGSAKAHYDGIVAFSQTDFTEDLKGIQQPVLVMHGDDDQIVPYENSGVLSAKLLPNGALKTYKGYPHGMP-TTHADVINADLLAFIRS--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1ZOI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -56961 for 1949 contacts (-29.2/contact) +
2D Compatibility (PS) -24310 + (NN) -11584 + (LL) 7248
1D Compatibility (HY) -5200 + (ID) 2200
Total energy: -93007.0 ( -47.72 by residue)
QMean score : 0.358
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