Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKESFKLIATAAAGLEAIVGREIRNL----GIDCQVEN------GRVRFHGD-------------IKTIIETNLWLRAADRIKIIVGEF---------PARTFEELFQGVYGLDWENYLPLGAKFPIAKAKCVKSKLHNEPSVQAISKKAVAKKLQKVFHRPEGVPLQENGAEFKIEVSILKDKATVMIDTTG-SSLFKRGYRAEKGGAPIKENMAAAIIQLSNWFPDKPLIDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEAWPWVDQSQVQKVRDEAESKANYDIDLDISGFDLDGRMVEIARKNAEEAGLGDVIKLKQMRLQDLK-TDKINGVIISNPPYGERLLDDKAVDILYNEMGQTFAPLKTWSKFILTSDEGFEK---KYGSQADKKRKLYNGTLKVDLYQYYGERVRRQVK |
| 3TM4 Chain:A ((1-370)) | ----MKFLLTTAQGIEDIAKREVSLLLKKLGISFQIEEKPLGIEGRLLLEAEKAYYVDEKGRKRELSISTYLNENSRLLHRVIIEIASEKFNGIEKDESEEALKRIKDFVSSLPVEQFVKVSETFAV-RSFRKGDHNITSIDIARTVGEAIFERLS----RFGTPLVNLDHPAVIFRAELIKDVFFLGIDTTGDSSLHKRPWRVYDHPAHLKASIANAMIELAELDGG-SVLDPMCGSGTILIELALRRYSG--------------------------------------EIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLPYGSM--IPDLYMKFFNELAKV---LEKRGVFITTEKKAIEEAIAENGFEIIHHRVIGHGGLMVHLYVVKLEHHH---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3TM4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -133556 for 2704 contacts (-49.4/contact) +
2D Compatibility (PS) -35944 + (NN) -12556 + (LL) 4380
1D Compatibility (HY) -16000 + (ID) 4400
Total energy: -198076.0 ( -73.25 by residue)
QMean score : 0.494
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