Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIMDKSIPKATAKRLSLYYRIFKRFNTDGIEKASSKQIADALGIDSATVRRDFSYFGELGRRGFGYDVKKLMNFFAEILNDHSTTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDGIPVYGISTINDHLIDSDIETAILTVPSTEAQEVADILVKAGIKGILSFSPVHLTLPKDIIVQYVDLTSELQTLLYFMNQQR
3WG9 Chain:A ((4-209))
---KTIVSMAVIRRLPRYHRYLEELLKNDVKRISSRELSEKMGVTASQIRQDLNNFG-----GYGYNVEELYNNLTKILGLDKTYNTIIIGAGNLGQAIANYTSFEKSGFNLKGIFDINPRL-FGLKIR-DVEVMDVETVEDFIARNKIDIGILCIPKDNAQYTADRLVRAGIKAIWNFLPIDLKVPDDVILENVHLSDSLFTVSYRLNEEE
General information:
TITO was launched using:
RESULT:
Template:
3WG9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -147748 for 1411 contacts (-104.7/contact) +
2D Compatibility (PS) -22336 + (NN) -10782 + (LL) 1028
1D Compatibility (HY) -18000 + (ID) 3050
Total energy: -200888.0 ( -142.37 by residue)
QMean score : 0.651
(partial model without unconserved sides chains):
PDB file :
Tito_3WG9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3WG9-query.scw
PDB file :
Tito_Scwrl_3WG9.pdb
: