Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYKDYT----GLDRTELLSKVRHMMSDKRFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAKELSDDEFLRLIDKYQLDPDLKKWGNNIWHGLVGIYKIQEDLAIKDQDILAAIAKHTVGSAQMSTLDKIVYV-ADYIEHNRDFPGVEEARELAKVDLNKAVAYETARTVS----FLASKAQPIYPKTIETYNAYIPYLD---
1JJV Chain:A ((1-205))
MTYIVGLTGGIGSGKTTIANLFTD----------LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILNRAALRERVFN--HDEDKLWLNNLLHPAIR-ERMKQKLAEQTAPYTLFVVPLLIENKLTALCDRILVVDVSPQTQLARSANFEQIQRIMNSQVSQQERLKWADDVINNDAELAQNLPHLQQKVLELHQFYLQQAENKN
General information:
TITO was launched using:
RESULT:
Template:
1JJV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21376 for 1255 contacts (-17.0/contact) +
2D Compatibility (PS) -19515 + (NN) -5319 + (LL) 1264
1D Compatibility (HY) -5200 + (ID) 1550
Total energy: -51696.0 ( -41.19 by residue)
QMean score : 0.383
(partial model without unconserved sides chains):
PDB file :
Tito_1JJV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JJV-query.scw
PDB file :
Tito_Scwrl_1JJV.pdb
: