Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIIIQRVNQASVSIEDDVVGSIEK----------GLVLLVGIAPEDTTEDIAYAVRKITSMRIFSDDEGKMNLSIQDIKGSVLSISQFTLFADTKKGNRPAFTGAADPVKANQFYDIFNQELA---NHVSVETGQFGADMQVSLINDGPVTIVLDTKNK
3KOD Chain:D ((1-157))
MRVVIQRVKGAILSVR--------KELEIISEIKNGLICFLGIHKNDTWEDALYIIRKCLNLRLWNNDNKTWDKNVKDLNYELLIVSQFTLFGNTKKGNKPDFHLAKEPNEALIFYNKIIDEFKKQYNDDKIKIGKFGNYMNIDVTNDGPVTIYIDTHD-
General information:
TITO was launched using:
RESULT:
Template:
3KOD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87957 for 938 contacts (-93.8/contact) +
2D Compatibility (PS) -14850 + (NN) -6555 + (LL) 404
1D Compatibility (HY) -14400 + (ID) 2800
Total energy: -126158.0 ( -134.50 by residue)
QMean score : 0.485
(partial model without unconserved sides chains):
PDB file :
Tito_3KOD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KOD-query.scw
PDB file :
Tito_Scwrl_3KOD.pdb
: