Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------------------MLEFDTIKD-SKQLNGLALAYIGDAIFEVYVRHHLLKQ-GFTKPNDLHKKSSRIVSAKSQAEILFFLQNQSFFTEEEEAVLKRGRNAKSGTTPKNTDVQTYRYSTAFEALLGYLFL------EKKEERLSQLVAEAIQFGTSGRKTNESAT
1JFZ Chain:A ((1-148))
GMKMLEQLEKKLGYTFKDKSLLEKALTHVSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNLLAQKLELHKFIR------IKRGKI------------NETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDILSAIKEGR------
General information:
TITO was launched using:
RESULT:
Template:
1JFZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31893 for 848 contacts (-37.6/contact) +
2D Compatibility (PS) -12861 + (NN) -7269 + (LL) 1120
1D Compatibility (HY) -7200 + (ID) 1150
Total energy: -59253.0 ( -69.87 by residue)
QMean score : 0.412
(partial model without unconserved sides chains):
PDB file :
Tito_1JFZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JFZ-query.scw
PDB file :
Tito_Scwrl_1JFZ.pdb
: