Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEHYYSEKPSVKSNKQTWSFRLRNKDFTFTSDSGVFSKKEVDFGSRLLIDSFEEPEVEGGILDVGCGYGPIGLSLASDFKDRTIHMIDVNERAVELSNENAEQNGITNVKIYQSDLFSNVD-SAQTFASILTNPPIRAGKKVVHAIFEKSAEHLKASGELWIVIQKKQGAPS---AIEKLE--------EL--FDEVSVVQKKKGYYIIKAKKV
1XXL Chain:A ((13-172))
------------------------------------------------MIKTAEC-RAEHRVLDIGAGAGHTALAFSPY--VQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAES-LPFPDDSFDIITCRYAAHHFSD-VRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQ--
General information:
TITO was launched using:
RESULT:
Template:
1XXL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49339 for 1104 contacts (-44.7/contact) +
2D Compatibility (PS) -15682 + (NN) -6995 + (LL) 2752
1D Compatibility (HY) -5200 + (ID) 1450
Total energy: -75914.0 ( -68.76 by residue)
QMean score : 0.450
(partial model without unconserved sides chains):
PDB file :
Tito_1XXL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XXL-query.scw
PDB file :
Tito_Scwrl_1XXL.pdb
: